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bioRxiv preprint doi: https://doi.org/10.1101/2020.01.30.927871; this version posted January 31, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. [— BETACOV/WUHAN/HBCDC-HB-01/2019]EPI ISL 402132 “_ IPBCAMS-WH-05/2020]EPI ISL 403928 BETACOV/WUHAN/WIV04/2019|EPI ISL 402124 BETACOV/WUHAN/WIV06/2019|EPI ISL 402129 '——. BETACOV/WUHAN/IPBCAMS-WH-02/2019|EPI ISL 403931 [— BETACOV/WUHAN/WIV07/2019|EPI ISL 402130 [— BETACOV/WUHAN/IVDC-HB-01/2019]EPI ISL 402119 L BETACOV/WUHAN/IPBCAMS-WH-01/2019|EPI ISL 402123 [— BETACOV/GUANGDONG/20SF028/2020|EPI ISL 403936 BETACOV/GUANGDONG/20SF040/2020|EPI ISL 403937 BETACOV/WUHAN-HU-1/2019]EPI ISL 402125 BETACOV/ZHEJIANG/WZ-01/2020]EPI ISL 404227 -—— BETACOV/WUHAN/IVDC-HB-04/2020|EPI ISL 402120 [— BETACOV/WUHAN/IVDC-HB-05/2019]EPI ISL 402121 _ BETACOV/WUHAN/IPBCAMS-WH-03/2019]EPI ISL 403930 | outgroup [— BETACOV/WUHAN/WIV02/2019|EPI ISL 402127 L BETACOV/WUHAN/WIV0S/2019|EPI ISL 402128 BETACOV/WUHAN/IPBCAMS-WH-04/2019|EPI ISL 403929) [— BETACOV/GUANGDONG/20SF014/2020)EPI ISL 403934 [— BETACOV/NONTHABURI/61/2020]E PliSie403962 _ BETACOV/NONTHABURI/74/2020]EPI ISL 403963 BETACOV/ZHEJIANG/WZ02/2020|EPI ISL 404228, BETACOV/USA/IL1/2020|EPI ISL 404253 [— BETACOV/GUANGDONG/20SF012/2020)EPI ISL'403932 PSBETACOV/GUANGDONG/20SF013/2020|EPIISL 403933 L BETACOV/GUANGDONG/20SFO25/2020]EPI ISL 403935 BETACOV/USA/WA\1/2020|EPI ISL 404895 BETAGOV/BAT/YUNNAN/RATG13/2013]EPI IS0.402131 Fig.S3 Phylogenetic tree of 28 clinical isolates genome of 2019-nCoV including one from bat as a host.